Novosibirsk State University Journal of Information Technologies
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ISSN 2410-0420 (Online), ISSN 1818-7900 (Print)

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All Issues >> Contents: Volume 08, Issue No 3 (2010)

Web-oriented system for complex querying biological relational data sources based on data structure semantic model
Roman Olegovich Korotkov, Pavel Sergeyevich Demenkov

Institute of Cytology and Genetics SB RAS
UDC code: 004.043

Abstract
The paper describes the system developed for building and executing complex queries to relational data sources of biological information. Architecture of a scalable system designed to support execution of multiple queries and rendering table or chart representation for the results is discussed. We suggest a method of translating a query defined in semantic terms to an equal SQL query. The user interface of the web application implemented with Adobe Flex technology is described

Key Words
bioinformatics, semantic model, data mining, web-based data processing

How to cite:
Korotkov R. O., Demenkov P. S. Web-oriented system for complex querying biological relational data sources based on data structure semantic model // Vestnik NSU Series: Information Technologies. - 2010. - Volume 08, Issue No 3. - P. 13-22. - ISSN 1818-7900. (in Russian).

Full Text in Russian

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References
1. Benton D. et al. GenBank // Nucleic Acids Research. 2009. Vol. 37. P. D26–D31.
2. Cochrane G. R., Galperin M. Y. The 2010 Nucleic Acids Research Database Issue and online Database Collection: A Community of Data Resources // Nucleic Acids Research. 2010. Vol. 38. P. D1–D4.
3. Chen I.-M. A., Kosky A. S., Markowitz V. M., Szeto E., Topaloglou T. Advanced Query Mechanisms for Biological Databases // AAAI Press. Proceedings of the Sixth International Conference on Intelligent Systems for Molecular Biology. 1998. Vol. 6. P. 43–51.
4. Navarro D. J. et al. BioBuilder as a Database Development and Functional Annotation Platform for Proteins // BMC Bioinformatics. 2004. Vol. 20. P. 5–43.
5. Birney E., Clamp M. Biological Database Design and Implementation // Briefings in Bioinformatics.
2004. Vol. 5. Is. 1. P. 31–38.
6. Chen J. Y., Carlis J. V., Gao N. A Complex Biological Database Querying Method // ACM. Proceeding of the 2005 ACM Symposium of Applied Computing. 2005. Vol. 20. P. 110–114.
7. Kazic T., Coe E., Polacco M., Shyu C.-R. Whither Biological Database Research? // OMICS A Journal of Integrative Biology. 2003. Vol. 7. No. 1. P. 61–65.
8. Newsome M., Pancake C., Hanus J. HyperSQL: Web-based Query Interfaces for Biological Databases // System Sciences. Proceedings of the 30th Hawaii International Conference. 1997. Vol. 4. P. 329–339.

Publication information
Main title Vestnik NSU Series: Information Technologies, Volume 08, Issue No 3 (2010).
Parallel title: Novosibirsk State University Journal of Information Technologies Volume 08, Issue No 3 (2010).

Key title: Vestnik Novosibirskogo gosudarstvennogo universiteta. Seriâ: Informacionnye tehnologii
Abbreviated key title: Vestn. Novosib. Gos. Univ., Ser.: Inf. Tehnol.
Variant title: Vestnik NGU. Seriâ: Informacionnye tehnologii

Year of Publication: 2010
ISSN: 1818-7900 (Print), ISSN 2410-0420 (Online)
Publisher: Novosibirsk State University Press
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